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Secondary Antibodies for Super Resolution Microscopy Jackson ImmunoResearch

Secondary antibodies conjugated with Alexa Fluor® 488 / 594 / 647, FITC and Cy5 for STED and STORM. 

JIR Antibody Dye Conjugates for use in SuperResolution (SR) Microscopy

Super-resolution microscopy (SRM) encompasses any optical technique which circumvents the resolution limits of light diffraction found in conventional light microscopy. SRM techniques allow cellular structures to be resolved to the sub-organelle level, enabling information about the 3D structure of cellular components to be determined, and single molecule colocalization to be observed.

Each SRM technique has its own requirements for probe selection. Jackson ImmunoResearch offers a wide selection of labeled secondary antibodies with dyes known to be robust in SRM methods. It should be noted that the field of SRM changes rapidly and guidance for each of the techniques is beyond the scope of this catalog. It is therefore recommended that information from specialized technical literature is sought to aid fluorophore selection. 

The following sections briefly outline the principles of some of the most popular SRM techniques:

Stimulated Emission Depletion (STED) microscopy

Diffraction of light by a microscope lens causes light from a single point to appear over a larger area, known as a point spread function or PSF (see Figure 38).
Stimulated emission depletion (STED) microscopy produces super-resolution images by confining the fluorescing region (PSF) of a sample. STED microscopes use two overlapping lasers, the first of which excites the fluorophores as per conventional microscopy (Figure 39A). The second laser, called a depletion laser (STED laser), excites a “donut” of light, with a very small (~30 nm) zero intensity (unexcited) point at its center. This second laser essentially “switches off” the fluorescence generated by the first laser except at the center of the donut, thereby reducing the excited fluorescent molecules to those at the zero point. This effectively reduces the PSF to produce a very small focused region of single molecule fluorescence. Without overlapping interference patterns, high-resolution images can be obtained (Figure 39D). Images with a resolution up to 30 nm in the axial (x-y) plane have been reported.

 micros.jpg

Fluorophore-conjugated antibodies for STED

To achieve super-resolution, dyes must have a high emission cross section with the STED laser wavelength and efficiently achieve a high saturation. This intense illumination ensures that all molecules to be “turned off” by the STED laser are dominated by stimulated emission. Suitable
dyes should have a low propensity for photo-bleaching, with high quantum yields and contrast,
and contain sufficient density of labeling in close proximity to the target.
Jackson ImmunoResearch offers secondary antibodies conjugated to dyes over a broad spectral range that have been successfully employed in STED: Alexa Fluor® 488, FITC, Alexa Fluor® 594 and Alexa Fluor® 647.

Stochastic Optical Reconstruction Microscopy (STORM)

Single molecule localization can be achieved using Stochastic Optical Reconstruction Microscopy (STORM) using photoswitchable fluorophores to generate images with resolution superior to those collected using conventional methods. There are a number of SRM techniques which exploit the principle of reversible saturable optically linear fluorescence (RESOLFT), using photoswitching or photoactivation of fluorescent dyes. Examples include direct stochastic optical reconstruction microscopy (dSTORM), photoactivated localization microscopy (PALM), fluorescence photoactivation localization microscopy (fPALM), ground state depletion followed by individual molecule return (GSDIM), and super-resolution optical fluctuation imaging (SOFI).
These techniques can be performed using either a pair of dyes to function as an effector and an activator dye to achieve photoswitching, or using dyes which “self-switch” in the case of direct STORM (dSTORM) (Heilemann et al., 2008). Jackson ImmunoResearch provides secondary antibody conjugates suitable for dSTORM applications. Briefly, a relatively low-intensity excitation laser excites the sample, randomly activating a small number of dye molecules. The individually fluorescing dye molecules are spread apart enough so the center of their point spread function can be calculated, which infers the exact location of the dye. A second laser is then used to switch all the molecules off and the process is repeated. High resolution images are then mathematically generated by overlapping all of the mapped point spread functions of each dye.

Fluorophore-conjugated antibodies for single molecule localization experiments

The best dyes for single molecule localization are typically very bright and result in enough photons to reliably produce tight Gaussian distributions. Jackson ImmunoResearch offers several proven dyes in a broad spectral range such as Alexa Fluor® 488, Alexa Fluor® 647 and Cy™5 for use in these types of experiments.

Suggested fluorescent dye conjugates for super-resolution microscopy

 STED

Excitation (nm) Emission (nm)
Alexa Fluor® 488 493 519
Fluorescein / FITC 492 520
Alexa Fluor® 594 591 614
Alexa Fluor® 647 651 667
 
 dSTORM

Excitation (nm) Emission (nm)
Alexa Fluor® 488 493 519
Alexa Fluor® 647 651 667
Cy5 650 670

 

Reference:
Huang, B., Bates, M., & Zhuang, X. (2009). Super-resolution fluorescence microscopy.
Annual Review of Biochemistry, 78 , 993–1016.
Farahani, J.N., et al. (2010). Stimulated Emission Depletion (STED) Microscopy: from Theory to Practice.
Microscopy: Science, Technology, Applications and Education. 1539-1547.
Heilemann M,et al., (2008) Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes. Angew Chem Int Ed Engl. 47:6172–6176
Dempsey, et al. (2011). Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging. Nature Methods, 8, 1027-1036.

 
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